Talks and Seminars

Seminars (previous years)

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Two PTSD subgroups identified by resting-state fMRI computational analysis

Dr. Adi Maron-Katz, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University | February 26, 2020

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The evolution of aneuploidy in cancer models: Perils and opportunities

Dr. Uri Ben-David, Dept. of Human Molecular Genetics & Biochemistry, School of Medicine, TAU | January 8, 2020

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Trapped between pathogens and autoimmunity: The evolution of the mammalian immune system

Dr. Tzachi Hagai, School of Molecular Cell Biology & Biotechnology, Life Sciences, TAU | December 18, 2019

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The accelerated evolution of oncology treatment, real life practice

Dr. MD Ronen Brenner, Head of Oncology Institute, The Edith Wolfson Medical Center, Holon | January 23, 2019

Learning to act from observational health data

Dr. Uri Shalit, Statistics & Information Systems Engineering, Faculty of Industrial Engineering and Management, Technion. | October 17, 2018

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Predictive Modeling in Stem Cell Transplantation: Lessons Learned and Future Challenges

Roni Shouval MD, PhD, Hematology Division, Talpiot Medical Leadership Program, Chaim Sheba Medical Center, Tel-HaShomer, Israel | July 25, 2018

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Deep learning for protein-RNA interactions

Dr. Yaron Orenstein, Department of Electrical and Computer Engineering, Ben-Gurion University | May 2, 2018

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Dynamic investigation of inflammation markers for early detection of cytokine storm

Prof. MD. Shlomo Berliner, Head of the Dept. of Internal Medicine at the Tel Aviv Sourasky Medical Center, Ichilov | November 1, 2017

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Big Data in Health Care - a Game Changer

Prof. MD. Varda Shalev, Director, Institute for Health, Research & Innovations, Maccabi Healthcare Services | October 25, 2017

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Mapping and Modeling of Microbial Cellular Networks

Prof. James Galagan, Departments of Biomedical Engineering and Microbiology; National Emerging Infectious Diseases Laboratory, Boston University. | July 19, 2017

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Detecting transcript fusions for transcriptome diagnostics

Lior Pachter | April 5, 2017

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Genetic Media

Yaniv Erlich | December 21, 2016

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Data-driven innovation in healthcare

Ran Balicer | December 14, 2016

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Genetic and Epigenetic Determinants of Leukemia Evolution

Dan Landau | November 9, 2016

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Algorithms for finding significant combinations of mutations in cancer

Fabio Vandin | July 27, 2016

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Elucidating Compound Mechanism of Action by Network Dysregulation Analysis in Perturbed Cells

Yishai Shimoni | February 11, 2015

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Studying tissue heterogeneity by measuring single-cell gene expression

Effi Kenigsberg | January 21, 2015

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From 1D to 3D and back: Explaining and exploiting genome structure

Noam Kaplan | January 7, 2015

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Reconstructing Breakage Fusion Bridge architectures using noisy copy numbers

Shay Zakov | March 12, 2014

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A global view of the selection forces in the evolution of yeast cis-regulation.

Amos Tanay | February 25, 2014

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Cohesin stabilizes interphase chromosomal architecture

Eitan Yaffe | March 20, 2013

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RNA-mediated transgenerational inheritance of acquired traits

Oded Rechavi | January 2, 2013

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Computational methods of characterizing molecular aberrations on cancer genomes and optimizing treatment outcomes

Chen-Hsiang Yeang | September 3, 2012

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Long intervening noncoding RNAs: genomics, evolution and functions in embryonic development

Igor Ulitsky | June 27, 2012

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Judith Berman | May 2, 2012

Reconstructing Boolean Models of Signaling

Roded Sharan | April 18, 2012

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Using Individual Human Genomes to Illuminate the Mysteries of Early Human History

Ilan Gronau | December 21, 2011

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Tzachi Pilpel | December 7, 2011

Candidate gene prioritization by genomic data fusion

Yves Moreau | June 1, 2011

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Uncovering the human cell lineage tree in health and disease: the next grand scientific challenge

Ehud Shapiro | May 5, 2011

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Understanding miRNA roles in breast cancer through enrichment networks

Israel Steinfeld | March 16, 2011

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A network biology approach to decipher cellular response pathways

Esti Yeger Lotem | February 23, 2011

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In vivo transcription factor - target recognition: What can we learn from ChIP-Seq data?

Philipp Bucher | January 25, 2011

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An introduction to the personal methylome

Lior Pachter | December 22, 2010

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ChemSpaceScanner: A platform for virtual screening of HUGE chemical libraries at high resolution

Rakefet Rosenfeld | October 27, 2010

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Prior Knowledge Integration of Gene Networks Data into Gene Expression Analysis

Ofer Lavi | July 28, 2010

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Annelyse Thevenin (Paris-Sud University) | June 9, 2010

Rolf Backofen | May 4, 2010

Room and time change

Pierre Baldi (Safra Lecture) | March 1, 2010

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Finding interesting patterns in microarray data

Li Teng (Chinese University of HK) | January 26, 2010

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Accurate estimation of expression levels of homologous genes in RNA-seq experiments

Eran Halperin | January 20, 2010

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Gal H. Romano | January 6, 2010

A report from the 17th Euroconference on Apoptosis

Guy Karlebach | December 30, 2009

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On the Roles of Computer Science in Systems Biology

Oded Maler | December 23, 2009

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Leveraging genetic variability across populations for the identi.cation of causal variants

Noah Zaitlen | December 16, 2009

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Some old and new ideas on efficient seeding for biosequence search

GrŽgory Kucherov (CNRS LIlle) | December 9, 2009

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Finding function in ÔJunk DNAÕ

Nadav Ahituv (UCSF) | December 2, 2009

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Utilizing metagenomic data for the study of genes and gene cassettes

Itay Sharon (Technion) | November 25, 2009

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Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

Moran Yassour (HUJI) | November 18, 2009

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The intertwined evolutionary histories of marine Synechococcus and Prochlorococcus

J. Peter Gogarten (University of Connecticut) | November 11, 2009

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Pavel Pevzner (UCSD) | October 29, 2009

A universal adaptive translation efficiency profile of proteins

Tzachi Pilpel (WIS) | October 21, 2009

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Report on International Summer School and Workshop 2009 on Regulatory (Epi-)Genomics

Esther Lou Pass | October 14, 2009

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How cells decide on their fate? (OR: Challenges in single cell imaging informatics)

Iftach Nachman | September 30, 2009

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In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction

GŽraldine Jean (Bordeaux) | August 12, 2009

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Discovering motifs in large genomic datasets

Chaim Linhart | July 22, 2009

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Sharon Bruckner and Falk HŸffner | July 15, 2009

Reconstructing Phylogenies from Noisy Metrics

Ilan Gronau (Technion) | July 8, 2009

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Methods for the analysis of human genetic variation

Eran Halperin | June 17, 2009

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Gene regulation by microRNAs

Noam Shomron | June 10, 2009

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Amos Tanay (WIS) | June 3, 2009

The Pivotal Role of Cellular Stress in Shaping Genetic Interaction Maps

Ariel Jaimovich (HUJI) | May 27, 2009

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Credit Risk Assessment using Logistic Regression and KNN

Guy Harari | May 20, 2009

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Conference Report - FEBS-SysBio2009

Guy Karlebach | April 22, 2009

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Polynomial time algorithms for clustering and image segmentation problems

Dorit Hochbaum (Berkeley) | March 25, 2009

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Genetics with a Twist - Novel Methods for Characterizing Proteins Required for Folding in the Secretory Pathway

Maya Schuldiner (WIS) | February 25, 2009

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The Gene-Duplication Problem

Mukul Bansal (Iowa State University) | February 18, 2009

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A universal relationship between gene compactness and expression levels in multicellular eukaryotes

Liran Carmel (HUJI) | February 4, 2009

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Topology-free querying of protein interaction networks

Sharon Bruckner and Falk HŸffner | January 28, 2009

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Dynamic Analysis of Molecular Networks

Gal Chechik (Google) | January 21, 2009

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Ñ | January 14, 2009

Inferring Whole Genome Methylation Status using High-Throughput Sequencing Data

Meromit Schuster (Berkeley) | January 7, 2009

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Elad Ziv (UCSF) | December 31, 2008

Microbial transcriptome analysis with next generation sequencing

Rotem Sorek (WIS) | December 10, 2008

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A report from the 16th Euroconference on Apoptosis

Guy Karlebach | December 3, 2008

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Conference reports

Idan Zohar, Guy Karlebach | July 16, 2008

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Do Cells Play Dice? Stochasticity and Regulation in Gene Expression

Nir Friedman (Weizmann) | June 18, 2008

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Comparing Protein Interaction Networks via a Graph Match-and-Split Algorithm

Sharon Bruckner (TAU) | June 11, 2008

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Translational Control: Non-Coding RNAs and Alternative Splicing

Rolf Backofen (University of Freiburg) | May 28, 2008

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Linear Work Suffix Array Construction

Ofer Lavi (TAU) | May 21, 2008

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Amos Tanay | April 9, 2008

The Genographic Project: Background and Some Statistical Challenges

Saharon Rosset (TAU) | March 26, 2008

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Optimal solutions for hard graph-modelled clustering problems

Falk Hueffner (TAU) | March 19, 2008

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CFinder: Efficient module finder in directed, undirected and weighted networks

Illes Farkas (Eotvos University) | March 5, 2008

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Limor Broday (TAU) | February 27, 2008

Conference report: 2007 RECOMB regulatory genomics satellite

Daniela Raijman (Google) | February 6, 2008

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Identifying genes whose regulation evolves under natural selection in primates

Ran Blekhman (University of Chicago) | January 23, 2008

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The making of a molecular time bomb: How does Huntington know when to strike?

Shai Kaplan (Weizmann) | January 16, 2008

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Geometric pattern matching using the Earth MoverÕs Distance

Panos Giannopoulos (TAU) | January 9, 2008

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Horizons in microbial genomics

Rotem Sorek (Berkeley) | January 2, 2008

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Haplotypes in the Germline and in the Soma: Ancestral IBD Segments and Tumor Amplification

Itsik PeÕer (Columbia University) | December 31, 2007

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Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

Tal Dagan (Heinrich-Heine Universitaet Duesseldorf) | December 26, 2007

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Algorithms for Gene Finding, Network Alignment, and Ancestral Population Inference

Serafim Batzoglou (Stanford) | December 20, 2007

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Conference report: 2007 CSHL/WT Meeting on Interactome Networks

Igor Ulitsky | December 6, 2007

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MAGIC: An Integrative Method for Accurate Genome Mapping

Firas Swidan (TAU) | November 28, 2007

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A Modular Approach for Integrative Analysis of Large-scale Gene-expression and Drug-response Data

Sven Bergmann (University of Lausanne) | November 21, 2007

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Optimal Solutions for Hard Network Problems in Bioinformatics

Falk Hueffner (TAU + Friedrich-Schiller university of Jena) | October 31, 2007

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Conference reports

Michal Ozery-Flato | October 24, 2007

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Molecular and structural basis for the organization of protein networks

Yanay Ofran (Columbia University) | October 17, 2007

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Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network

Reut Shalgi (Weizmann) | October 10, 2007

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Integrated analysis of concurrent microRNA and gene expression in the context of protein interactions

Igor Ulitsky | August 15, 2007

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Evaluation of Gene Expressions Clusters via Information Theoretic Measure

Irad Ben-Gal (TAU) | August 1, 2007

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The influence of chromatin modifiers on transcription

Israel Steinfeld | July 18, 2007

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RECOMB and ECCB conference reports

Michal Ozery-Flato, Yonit Halperin, Ofir Davidovich | July 11, 2007

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HGM conference report

Ofir Davidovich | July 4, 2007

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Outcome prediction in breast cancer: Machine Learning vs Biology

Eytan Domany (Weizmann) | June 27, 2007

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RECOMB conference reports

Igor Ulitsky | June 20, 2007

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Inference of Population Structure Using Multilocus Genotype Data

Ofir Davidovich | June 13, 2007

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Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites

Daniela Raijman | June 6, 2007

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Tree scanning: a tool for studying the genetic architecture of complex traits

Alan Templeton (Washington University) | May 30, 2007

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Richard Karp (Berkeley) | May 16, 2007

Classification of microarray data using gene networks

Michael Gotkin | May 9, 2007

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Discovering Motifs in Ranked Lists of DNA Sequences

Yonit Halperin | April 16, 2007

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Finding Informative Regulatory Elements

Noam Slonim (IBM Research) | March 14, 2007

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Integrative analysis of diverse large-scale data sets for Hepatitis C disease

Benno Schwikowski (Pasteur Institute) | February 28, 2007

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RNAspa: A Breadth-First Search Algorithm to Simultaneously Align and Predict the Secondary Structure of ncRNA Molecules

Yair Horesh (Bar Ilan) | February 14, 2007

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Seeds for Homology Search in DNA: Indel Seeds and Parameter Free Calculation of Sensitivity

Gary Benson (Boston University) | January 17, 2007

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On the association between domain-domain interactions and protein-protein interactions

Hanah Margalit (HUJI) | January 10, 2007

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Inferring Phylogenies via LCA-distances

Ilan Gronau (Technion) | December 27, 2006

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Rotem Sorek (Berkeley) | December 20, 2006

Yoav Gilad (University of Chicago) | December 14, 2006

Conference report

Ofir Davidovich | December 6, 2006

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Conference reports

Daniela Raijman and Michal Ozery-Flato | November 8, 2006

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Lateral gene transfer in microbial evolution

Uri Gophna (TAU) | November 1, 2006

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CPM 2006 conference report

Michal Ozery-Flato | September 20, 2006

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Computational Design of RNA Switches

Danny Barash (BGU) | September 6, 2006

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The quest for viral ÔphotosynthesisÕ using both metagenomics and environmental genomics

Oded Beja (Technion) | August 16, 2006

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Canalization of development by miRNAs

Eran Hornstein (Weizmann) | August 9, 2006

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Michal Ozery-Flato | August 2, 2006

A Study of Accessible Motifs and RNA Folding Complexity

Michal Ziv-Ukelson | July 26, 2006

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Irit Gat-Viks | July 9, 2006

We resemble prokaryotes much more than we would like to admit

Yuval Tabach (Weizmann) | July 5, 2006

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Gene recruitment and adaptive reprogramming of genetic regulatory networks

Erez Braun (Technion) | June 28, 2006

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Igor, Offir, Yonit, Michal Z-U | June 14, 2006

Avi Orr-Urtreger (Ichilov) | May 31, 2006

Computational Problems in Modern Human Genetics

Gadi Kimmel | May 24, 2006

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A Probabilistic Model for the Survivability of Cells

Ilan Adler (Berkeley) | May 16, 2006

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Pattern matching with character classes

Chaim Linhart | May 7, 2006

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A Genomic Code for Nucleosome Positioning and Chromosome Function

Eran Segal (Weizmann) | April 26, 2006

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A New Approach to Protein Identification

Dekel Tsur (Ben Gurion Univ) | March 29, 2006

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The Biozon system for complex analysis of heterogeneous interrelated biological data and discovery of emergent structures

Golan Yona (Technion) | March 22, 2006

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Reconstructing repeat-annotated phylogenetic trees

Firas Swidan (Technion) | March 15, 2006

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A novel inside-out prostanoid signaling pathway that mediates GnRH receptor auto-regulation and LH release

Zvi Naor | March 8, 2006

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An Algebraic Model for Sorting by Transpositions

Tzvika Hartman (Bar Ilan) | March 1, 2006

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Conference report

Irit Gat-Viks | February 22, 2006

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The human transcriptome: Evolution in action

Rotem Sorek | February 1, 2006

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EVEREST: Automatic Identification and Classification of Protein Domains in All Protein Sequences

Elon Portugaly (HUJI) | January 25, 2006

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Data, technology and populations for genomewide association studies

Itsik PeÕer (Broad Institute) | January 18, 2006

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Structural Approximations for Genetic Analysis

Ydo Wexler (Technion) | January 11, 2006

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Elucidating function and organization of molecular networks: From Molecules to a System

Dana PeÕer (Harvard Medical School) | January 4, 2006

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Information theoretic analysis of biological data

Noam Slonim (Princeton) | December 28, 2005

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Conference reports

Michal Ozery-Flato and Rani Elkon | December 14, 2005

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Rapid Association Test for SNPs and Haplotypes Using Importance Sampling and Linkage Disequilibrium Decay

Gadi Kimmel | December 7, 2005

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Conference report Ð European Networking Summer School

Igor Ulitsky | November 30, 2005

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Using expectation-maximization to infer the early evolution of spliceosomal introns

Liran Carmel (NCBI) | November 9, 2005

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Reliable protein function prediction by Bayesian phylogenomics

Steve Brenner (Berkeley) | November 2, 2005

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Swimming in GOBS of Data

Eugene Kolker (Biatech) | October 30, 2005

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Biological context networks: viewing biology via multiple functionalities and milieux

Simon Kasif (Boston U.) | August 17, 2005

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Chaim Linhart | August 10, 2005

A Sub-quadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrices

Michal Ukelson (Technion) | July 27, 2005

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Amos Tanay | July 20, 2005

Islands of Tractability for Parsimony Haplotyping

Roded Sharan | July 13, 2005

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Contemporary issues in docking and scoring, implication on G protein coupled receptor drug discovery

Yael Marantz (Predix Pharmaceuticals) | June 29, 2005

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Regulation of Amino-Acid Polymorphism by Alternative Splicing

Yael Mandel-Gutfreund (U. Haifa) | June 22, 2005

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Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Jacob Scott (UC Berkeley) | June 8, 2005

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Irit Gat-Viks, Igor Ulitsky | June 1, 2005

David Sankoff (U. Ottawa) | May 23, 2005

Yom Hazikaron | May 11, 2005

The factor graph network model for biological systems

Irit Gat-Viks | May 4, 2005

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Probabilistic evolutionary models and (a few of) their applications

Tal Pupko (TAU Cell Research and Immunology) | April 20, 2005

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Maximum Likelihood of Evolutionary Trees is Hard

Tamir Tuller | April 13, 2005

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Information Theoretic Approaches to Whole Genome Phylogenies

David Burstein and Igor Ulitskyi | April 6, 2005

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Proteins associated with cancer occupy central positions in the protein-interaction network

Nir Ben-Tal (TAU Biochemistry) | March 30, 2005

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Trying to make sense out of the COP9 signalosome

Danny Chamovitz (TAU Botany) | March 23, 2005

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Approximation Schemes for Clustering Problems

Yuva Rabani (Technion) | March 16, 2005

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Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy

Gad Kimmel | March 9, 2005

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closed meeting | March 2, 2005

Phenotypic variability in the response to antibiotic

Nathalie Questembert-Balaban (U. Jerusalem) | February 23, 2005

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Recent advances in FDR methodology

Daniel Yekutieli (TAU Statistics) | February 2, 2005

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Approximation Algorithms for Sorting by Transpositions Problems

Tzvika Hartman (Weizmann) | January 19, 2005

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Using Microarrays to Microdissect Cancer Genomes

Zohar Yakhini (Technion) | January 12, 2005

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A Tale of three Tales

Eitan Rupin | January 5, 2005

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From Sequence to Expression

Eran Segal (Stanford) | December 31, 2004

Probabilistic Inference of Alternative Splicing Events in Microarray Data

Ofer Shai (U. Toronto) | December 29, 2004

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Conference reports

Gadi Kimmel, Tzvika Hartman, Amos Tanay | December 24, 2004

Innovative approaches for discovery of new splice variants

Rotem Sorek | December 22, 2004

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Modular epistasis in yeast metabolism

Daniel Segre (Harvard) | December 15, 2004

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Algorithmic approaches for analyzing genetic networks

Roded Sharan (Berkeley) | December 10, 2004

Yoel Kloog (TAU Neurobiochemsitry) | December 8, 2004

Natural Antisense Transcription is Widespread and Conserved in Mammals

Dvir Dahari (compegen) | December 3, 2004

Biological Networks Involving Metabolic Pathways and Gene Regulation: Modeling and Inference

Irit Gat-Viks | November 26, 2004

Modeling Dependencies in Protein-DNA Binding Sites

Yoseph Barash (HUJI) | November 19, 2004

Genome-wide screening for RNA editing sites

Erez Levanon (Compugen) | November 17, 2004

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Ultra-Conservation in the Human Genome

Gil Bejerano (UCSC) | November 10, 2004

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Amos Tanay | November 3, 2004

Sharp: Showcase of ATM Related Pathways

Nir Orlev | October 22, 2004

Feature selection finds new features relevant for alternative splicing

Gideon Dror (Tel Aviv College) | October 20, 2004

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Conference Report

Ran Elkon & Chaim Linhart | October 13, 2004

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The birth of a new exon

Rotem Sorek | October 1, 2004

Towards whole genome association studies

Itsik PeÕer (Whitehead Institute, MIT) | July 21, 2004

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Approximate Labelled Subtree Homeomorphism and its Application to Metabolic Pathways Analysis

Oleg Rokhlenko (Technion) | July 14, 2004

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Qubic: How to effectively combine small chip experiments with the public functional genomics repositories.

Israel Steinfeld | July 7, 2004

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Linear Separability and Classifiability of Gene Expression Datasets

Giora Unger | June 30, 2004

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Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs

Tamar Barzuza | June 23, 2004

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Global and specific exploration of protein synthesis mechanisms in yeast.

Yoav Arava | June 9, 2004

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Convex Recoloring of Strings and Trees

Sagi Snir | May 19, 2004

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Ontogenetic footprint dominates tissue gene expression

Itai Yanai | May 12, 2004

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conference report | May 5, 2004

The multiple functions of Pax6 in eye development

Ruth Ashery-Padan | April 28, 2004

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From heterogeneous data to regulatory model: a probabilistic approach.

Daphne Koller | April 21, 2004

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Adaptation in a genetic switch

Naama Brenner | April 14, 2004

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MEX, a novel motif extraction algorithm, and its application to the promoter regions of S. Cerevisiae.

David Horn | March 17, 2004

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Did you know that Multiple Alignment is NP-hard?

Isaac Elias | March 10, 2004

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Making sense (rather than antisense..) out of multi-knockout experiments

Alon Kaufman | March 3, 2004

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The Incomplete Perfect Phylogeny Haplotype Problem

Gad Kimmel | February 18, 2004

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A methodology for logical analysis of transcription regulation

Reut Shalgi | January 28, 2004

Breast cancer risk: the role of germline mutations in BRCA1/BRCA2 and other genes in familial and sporadic cases

Eytan Friedman (Sheba medical center) | January 21, 2004

De novo Repeat Classification, Multiple Alignment, and Fragment Assembly

Pavel Pevzner | January 15, 2004

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Analysis of Gene Expression Data: Applications to Studies of Cancer, Differentiation and Stem Cells

Eytan Domani (WIS) | January 14, 2004

Preferential Attachment in the Protein Network Evolution

Eli Eisenberg (Compugen) | January 7, 2004

Evolution of spliceosomal introns: insights from comparative genomics

Eugene V. Koonin | January 1, 2004

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Module Networks: Reconstruction of regulatory moudles and their control programs from gene expression data

Dana PeÕer (HUJI) | December 25, 2003

Spectral Clustering of Proteins

Ori Sasson (HUJI) | December 18, 2003

Conference Reports

Ron, Irit, Gadi | December 11, 2003

Finding Regulatory Patterns in Bacterial Genomes

Eleazer Eskin | December 4, 2003

Computational Problems in Genetic Linkage Analysis

Dan Geiger (Technion) | November 27, 2003

Resolution of Haplotypes and Haplotype Frequencies from SNP Genotypes of Pooled Samples

Itsik PeÕer (WIS) | November 13, 2003

Journal club

Amos Tanay, Irit Gat-Viks | September 24, 2003

Restricting SBH Ambiguity via Restriction Enzymes

Sagi Snir (Technion) | September 4, 2003

Resolving and Identifying Blocks in Haplotype Data Using a Stochastic Model

Gadi Kimmel | August 13, 2003

Lipari Report

Chaim Linhart | August 6, 2003

Graph Modification Problems

Noga Amit | July 30, 2003

CSH Genome Conference Report. CPM Report

Rotem Soreq, Tzvika Hartman | July 16, 2003

Normalization of DNA Chip Data

Adi Maron | June 18, 2003

Assembling puzzles by breaking them into smaller pieces

Pavel Pevzner (UC San Diego) | June 3, 2003

Motifs and regulation

Marie-France Sagot (INRIA) | June 1, 2003

Graph Realization and its use in XOR Haplotyping.

Tamar Barzuza | May 28, 2003

A Simpler 1.5-Approximation Algorithm for Sorting by Transpositions

Tzvika Hartman | May 21, 2003

Transforming men into mice revisited (a correction to the theory of sorting by reversals and translocations)

Michal Ozery | May 14, 2003

Structural Bioinformatics Algorithms and Computer Assisted Drug Design

Haim Wolfson | April 30, 2003

Designing Optimally Multiplexed SNP Genotyping Assays

Yonatan Aumann (Bar Ilan U) | April 2, 2003

Computational dissections of cellular regulatory networksÊ

Tzachi Pilpel (WIS) | March 26, 2003

CSH report

Amos Tanay | March 19, 2003

Identifying Blocks and Sub-Populations in Noisy SNP Data

Gadi Kimmel | March 12, 2003

Genomic Sorting with Length-Weighted Reversals

Ron Pinter (Technion) | March 5, 2003

SAMBA: Integrated Analysis of Highly Heterogeneous Genomic Data

Amos Tanay | February 26, 2003

Using comparative genomics to study alternative splicing

Rotem Sorek (TAU, Compugen) | February 19, 2003

Resequencing By Hybridization

Dekel Tzur | January 22, 2003

Analyzing time series expression data: From individual gene expression to genetic regulatory networks

Ziv Bar Yoseph (MIT) | January 15, 2003

Large Scale Recovery of Haplotypes from Genotype Data using Imperfect Phylogeny

Eran Halperin (Berkeley) | January 2, 2003

Genome-wide In-silico Identification of Transcriptional Regulators Controlling Cell Cycle in Human Cells

Rani Elkon | January 1, 2003

Cell Cycle Control through Splicing

Martin Kupiec | December 24, 2002

Large Deviations for Optimal Local Sequence Alignments

Benny Yakir (HUJI) | December 17, 2002

ISMB report

Amos Tanay | August 21, 2002

The Society of Genes: Networks of Functional Links between Genes by Comparative Genomic

Itai Yanai, WIS | August 14, 2002

ISMB Talks

Amos Tanay, Ron Shamir | July 24, 2002

Controlling the False Discovery Rate in Behavioral Genetics and Microarrays Analysis ISMB Talks

Yoav Benjamini | July 24, 2002

Sorting signed permutations by reversals revisited: How to exploit parallel architectures, randomization, and efficient data structures

Elad Verbin | May 29, 2002

RECOMB report

Tzvika Hartman | May 22, 2002

Network motifs in the transcriptional regulation network of Escherichia coli

Uri Alon (WIS) | May 8, 2002

Denaturing High Performance Liquid Chromatography (DHPLC) and Diagnosis of DNA Alterations

Dani Bercovich (Migal) | April 24, 2002

Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem

Benny Chor | April 10, 2002

Revealing Modular Organization in the Yeast Transcriptional Program

Jan Ihmels (WIS) | March 20, 2002

Handling Long Targets and Errors in Sequencing by Hybridization

Tzvika Hartman | March 13, 2002

Using Graphical Probabilistic Models to Understand Gene Expression

Nir Friedman (HUJI) | March 6, 2002

Biclustering Gene Expression Data

Roded Sharan | February 11, 2002

Uri Keich (USC) | February 1, 2002

Four Taxon ML Forks under Molecular Clock: Analytic Solutions

Sagi Snir (Technion) | January 28, 2002

On the Complexity of Flexible Approximation Problems

Adi Akavia | January 21, 2002

The Restriction Scaffold problem

Ron Shamir | January 9, 2002

Journal Club

Rani Elkon, Amos Tanay | January 2, 2002

Recognition of Interval Graphs, Interval Probe Graphs, and Circular-arc Graphs

Ross McConnel (Colorado) | November 30, 2001

Inferring a set of master regulators in Molecular Networks

Amos Tanay | November 28, 2001

Exploiting Redundancy in the Genetic CodeÊ

Steve Skiena (Stony Brook) | November 21, 2001

conference reports: SNP 00, Nato comp. bio. SchoolÊ

Itsik PeÕer, Chaim Linhart, Rani Elkon | October 31, 2001

Analytic Solutions for Three Taxon MLMC Trees with Variable Rates Across SitesÊ

Benny Chor (Technion) | August 23, 2001

Bayesian Netowrks DayÊ

Dana PeÕer (HUJI) | August 8, 2001

From gene expression to gene interactionÊ

Rotem Sorek | August 1, 2001

Sequences that regulate al[u]ternative splicingÊ

Eran Segal (Stanford) | July 18, 2001

Rich Probabilistic Models for Gene ExpressionÊ

Dana PeÕer (HUJI) | July 12, 2001

Inferring Subnetworks from Perturbed Expression ProfilesÊ

Ann Bergeron (Univ. du Guebec a Montreal) | July 6, 2001

Sorting by Reversals Made SimpleÊ

Adi Akavia | June 27, 2001

Analysis of Synthesis Design ProblemÊ

Zohar Yakhini (Agilent) | June 13, 2001

Overabundance Analysis with Applications in Cancer Sub-classificationÊ

Maxim Shatsky | June 6, 2001

Flexible Alignment of Protein StructuresÊ

Tzvika Hartman and Michal Ozery | May 30, 2001

Genome RearrangementsÊ

Rani Elkon / Nir Orlev | May 16, 2001

The human genome project / protein interactions

Jaqui Beckman | May 9, 2001

From the positional cloning of calpain 3 to SNPs: on genetic and protein diversity

internal meeting | May 2, 2001

Scaling Law in Sizes of Protein Sequence FamiliesScaling Law in Sizes of Protein Sequence FamiliesÊ

Ron Unger (BIU) | April 28, 2001

Theoretical aspects of disease susceptibility gene discoveryÊ

Ariel Darvasi (HUJI) | April 21, 2001

Tissue Classification with Gene Expression ProfilesÊ

Iftach Nachman (HUJI) | March 14, 2001

An Information Theoretic Model for Genomic EvolutionÊ

Gill Bejeran (HUJI) | March 7, 2001

Conserved evolution of mRNA splicing between group II autocatalytic introns and spliceosomal introns

Gil Ast (TAU) | February 14, 2001

Reconstruction of Chromosomal Site Origin Based on Adjacent Haplotypes

Michael Korostishevsky (TAU) | January 31, 2001

On the Common Substring Alignment Problem

Michal Ziv-Ukelson (Haifa) | January 17, 2001

Identification of the gene causing mucolipidosis type IV

Nili Avidan (Weizmann) | January 10, 2001

Gene Expression Microarrays - Survey of ApplicationsÊ

Rani Elkon | December 27, 2000

Maximum Weight Hypertrees and Windmill Farms

Nati Srebro (MIT) | December 20, 2000

Brute force minimization in an antlion(*) town: The generation of decoy sets for proteins

Chen Kaesar (Weizmann) | December 13, 2000

microarray experiments produce only gene lists? Lessons from the use of oligonucleotide microarrays to analyze pulmonary fibrosis in mice and humans.

Naftali Kaminski (Sheba Hospital) | December 6, 2000

A Structural EM Algorithm for Phylogenetic InferenceÊ

Itsik PeÕer | November 22, 2000