Talks and seminars

Presentations

2018

Dvir Netanely, N. Stern, I. Laufer and R. Shamir. "PROMO:  Integrative analysis of multi-omic cancer data". Poster presentation, EACR-AACR-ISCR Conference 2018, The Cutting Edge of Contemporary Cancer Research, 9-11 October 2018, ICC Jerusalem, Israel.

N. Rappoport and R. Shamir. "NEMO: Cancer Subtyping by Multi-Omics Integration". Poster presentation, EACR-AACR-ISCR Conference 2018, The Cutting Edge of Contemporary Cancer Research, 9-11 October 2018, ICC Jerusalem, Israel.

A.  Avraham, N. Rappoport, S. Feldman, E. Nahmias, L. Heller, T. Karni, A. Sella, R. Shamir and E. Evron . "RNA-Seq Reveals Deregulation of G2/M and p53-p21-DREA- CDE/CHR Pathways in HMEC  BRCA1+/- Upon DNA Damage". Poster presentation, EACR-AACR-ISCR Conference 2018, The Cutting Edge of Contemporary Cancer Research, 9-11 October 2018, ICC Jerusalem, Israel.

G. Dinstag and R. Shamir. "Personalized prioritization of cancer driver mutations". Poster presentation, EACR-AACR-ISCR Conference 2018, The Cutting Edge of Contemporary Cancer Research, 9-11 October 2018, ICC Jerusalem, Israel.

R. Shamir. Computational genomics for medicine: some examples. Kickoff meeting of the Koret - UC Berkeley - Tel Aviv University Initiative in Computational Biology and Bioinformatics, UC Bekreley, October 9 2018.

G. Dinsdag and R. Shamir. "Prodigy: personalized prioritization of cancer driver genes". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

D. Coster  E. Fisher, S. Rosset, S. Shenhar-Tsarfaty, S. Berliner, E. Halperin and R. Shamir. "Early detection of cancer risk based on routine check-up data". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

D. Netanely , N. Stern, I. Laufer and R. Shamir. "Integrative analysis of multi-omic cancer data using PROMO". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

D. Pellow , I. Mizrahi and R. Shamir. "Exploring sequence properties in plasmid assemblies". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

N. Rappoport  and R. Shamir. "NEMO: Cancer Subtyping by Multi-Omics Integration". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

T. A. Hait, D. Amar, R. Shamir and R. Elkon "Cell type specific enhancer-promoter network inference based on single omic data". Poster presentation, The 20th Israeli Bioinformatics Symposium (IBS 2018), Rappaport Faculty of Medicine, Technion, Haifa, Israel, October 7, 2018.

T. A. Hait, D. Amar, R. Shamir and R. Elkon "Cell type specific enhancer-promoter network inference based on single omic data". Poster presentation, Genome Informatics, Wellcome Genome Campus, Hinxton, Cambridge, UK, September 17-20, 2018.

T. A. Hait, D. Amar, R. Shamir and R. Elkon "Cell type specific enhancer-promoter network inference based on single omic data". A talk in the 7th Graduate conference in Genetics, Genomics and Evolution, The Hebrew University of Jerusalem, Givat Ram, Jerusalem, September 4, 2018.

D. Netanely, N. Stern and R. Shamir. "Integrative analysis of multi-omic cancer data using PROMO". Poster presentation, The 3rd graduate student symposium on cancer,  DJERASSI-ELIAS Institute of Oncology, Sackler faculty of Medicine, Tel Aviv University, July 3, 2018.

T. A. Hait, D. Amar, R. Shamir and R. Elkon "Experimental FOCS: a new method for enhancer-promoter mapping". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

G. Dinstag and R. Shamir. "Personalized prioritization of cancer driver genes". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

D. Netanely, Z. Yakhini and R. Shamir. "Multi-omic correlation graph for analyzing cancer genomic data". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

R. Zeira and R. Shamir. "Sorting cancer genomes using DCJs, duplications and deletions". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

D. Coster, S. Shenhar-Tsarfaty, S. Berliner and R. Shamir. "Distinguishing between acute bacterial and viral infections based on EMR data". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

H. Levi, C. Levy and R. Shamir. "Using metabolic gene families for understanding melanoma". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

D. Pellow, I. Mizrahi and R. Shamir. "Exploring sequence properties in plasmid assemblies". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

N. Rappoport and R. Shamir. "MOCCASIN: Cancer subtyping by multi-omics integration". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

D. Netanely, N. Stern, I. Laufer and R. Shamir. "PROMO: An interactive tool for integrative analysis of multi-omic cancer data". Poster presentation, Edmond J. Safra Center Annual Retreat 2018, Maagan, May 27-28, 2018.

R. Shamir.  "Computational tools for analysis of big cancer data: the power of integration". Cancer Research Club seminar, Weizmann Institute of Science,  May 17, 2018.

R. Shamir.  "Disease bioinformatics: the good, the bad and the ugly".  Keynote speaker, RECOMB 2018, Paris, France, April 21-24, 2018.

N. Rappoport, R. Shamir.  "MOCCASIN: Cancer Subtyping by Multi-Omics Integration". Poster presentation. RECOMB-Computational Cancer Biology. Paris, France, April 19-20, 2018.

R. Zeira, R. Shamir.  "Sorting cancer genomes using double-cut-and-joins, duplications and deletions". Oral presentation. RECOMB-Computational Cancer Biology. Paris, France, April 19-20, 2018.

R. Zeira, R. Shamir "Sorting cancer genomes using double-cut-and-joins, duplications and deletions". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

T.A. Hait,  D. Amar, R. Shamir, R. Elkon "FOCS: A new method for enhancer-promoter mapping" Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

D. Pellow,  Y. Orenstein, G. Marçais, D. Bork, C. Kingsford, R. Shamir "Compact covering of sequences with universal hitting k-mer sets". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

N. Rappoport,  R. Shamir "MOCCASIN: Cancer Subtyping by Multi-Omics Integration". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

D. Netanely,  N. Stern, I. Laufer, R. Shamir "PROMO: An interactive tool for analyzing large high-throughput genomic datasets". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018. 

D. Coster,  E. Fisher, S. Shenhar-Tsarfaty, S. Berliner, E. Halperin, S. Rosset, R. Shamir "Early detection of cancer risk based on routine check-up data". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

G. Dinstag,  D. Amar, R. Shamir "Multivariate analysis enables personalized prediction of adverse heart and kidney events". Poster presentation, The annual meeting of the Genetic Society of Israel, FRONTIERS IN GENETICS XI, Tel Aviv University, February 7, 2018.

R. Shamir,  "A blood-based gene signature characterizing idiopathic Parkinson's disease". Invited speaker, Brainstorming Parkinson's Disease conference, Haifa, Israel, January 11-13, 2018.