NOTE: we discovered an error we made in the benchmark's code, where our choice of the number of clusters used by MCCA and LRACluster was not the one suggested by the authors.

After changing the criterion to choose the number of clusters, the performance of both methods became worse. We therefore kept our version to choose the number of clusters.

See a more detailed explanation here.



The results of the benchmark were published here.


Multi-Omics Cancer Benchmark TCGA Preprocessed Data

Name (link) Description Size
AML Preprocessed TCGA multi-omic data for AML. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 18.1MB
BIC Preprocessed TCGA multi-omic data for BIC. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 112MB
COAD Preprocessed TCGA multi-omic data for COAD. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 34MB
GBM Preprocessed TCGA multi-omic data for GBM. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 59.8MB
KIRC Preprocessed TCGA multi-omic data for KIRC. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 57.8MB
LIHC Preprocessed TCGA multi-omic data for LIHC. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 43.2MB
LUSC Preprocessed TCGA multi-omic data for LUSC. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 52.3MB
SKCM Preprocessed TCGA multi-omic data for SKCM. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 48.8MB
OV Preprocessed TCGA multi-omic data for OV. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 44.1MB
SARC Preprocessed TCGA multi-omic data for SARC. Includes three omics: gene expression, DNA methylation and miRNA expression data, and patient survival data. 27.6MB
Clinical data Preprocessed clinical data for patients in the TCGA datasets for all cancer types in the benchmark. 0.99MB