Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions
I. Nurick, R. Shamir and R. Elkon.
bioRxiv, doi: http://dx.doi.org/10.1101/337766.
Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions
R. Zeira and R. Shamir.
Bioinformatics, bty381, https://doi.org/10.1093/bioinformatics/bty381
FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
T. A. Hait, D. Amar, R. Shamir, R. Elkon.
Genome Biology, 19:56, https://doi.org/10.1186/s13059-018-1432-2, 2018.
MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants
A. Zwaenepoel, T. Diels, D. Amar, T. Van Parys, R. Shamir, Y. Van de Peer and O. Tzfadia.
Front. Plant Sci., https://doi.org/10.3389/fpls.2018.0035, 2018.
ADEPTUS: A discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases
D. Amar, A. Vizel, C. Levy & R. Shamir.
Bioinformatics, bty027, https://doi.org/10.1093/bioinformatics/bty027, 2018.