Publications

Latest

Complexity and algorithms for copy-number evolution problems

M. El-Kebir, B. J. Raphael, R. Shamir, R. Sharan, S. Zaccaria, M. Zehavi and R. Zeira

Algorithms for Molecular Biology, 12(1), 13, 2017.

Improving the performance of minimizers and winnowing schemes

G. Marcais, D. Pellow, D. Bork, Y. Orenstein, R. Shamir, C. Kingsford.

Bioinformatics, special issue of ISMB/ECCB 2017, Vol. 33, i110–i117 doi: 10.1093/bioinformatics/btx235, 2017.

Reconstructing cancer karyotypes from short read data: the half full and half empty glass

R. Eitan, R. Shamir.

bioRxiv 152447; doi: https://doi.org/10.1101/152447

Tired and misconnected: A breakdown of brain modularity following sleep deprivation.

E. Ben Simon, A. Maron-Katz, N. Lahav, R. Shamir and T. Hendler.

Human Brain Mapping, 38(6):3300-3314. doi: 10.1002/hbm.23596.

Reduced changes in protein compared to mRNA levels across non-proliferating tissues

K. Perl, K. Ushakov, Y. Pozniak, O. Yizhar-Barnea, Y. Bhonker, S. Shivatzki, T. Geiger, K.B. Avraham and R. Shamir

BMC Genomics, 18:305, DOI 10.1186/s12864-017-3683-9, 2017.

Faucet: streaming de novo assembly graph construction

R. Rozov, G. Goldshlager, E. Halperin, R. Shamir

BioRxiv, doi: http://dx.doi.org/10.1101/125658, 2017

Transcription factor family-specific DNA shape readout revealed by quantitative specificity models

L. Yang, Y. Orenstein, A. Jolma, Y. Yin, J. Taipale, R. Shamir and R. Rohs.

Molecular Systems Biology, 13, 910, DOI 10.15252/msb.20167238, 2017.

Improving the performance of minimizers and winnowing schemes

G. Marcais, D. Pellow, D. Bork, Y. Orenstein, R. Shamir, C. Kingsford.

BioarXiv, https://doi.org/10.1101/104075(2017).

Utilizing somatic mutation data from numerous studies for cancer research: proof of concept and applications

D. Amar, S. Izraeli and R. Shamir.

Oncogene, doi:10.1038/onc.2016.489 (2017).