PhD and MSc theses

Rami Eitan
Rami Eitan
MSc thesis, 56 pp., June 2016
Reconstructing cancer karyotypes from paired-end reads and copy number data
David Amar
David Amar
PhD thesis, 114 pp., December 2015
Novel methods for integrative analysis of heterogeneous large scale biomedical data
Adi Maron-Katz
Adi Maron-Katz
PhD thesis, 121 pp., October 2015
Unsupervised characterization of human brain networks that are involved in emotional processing and regulation
Yaron Orenstein
Yaron Orenstein
PhD thesis, 66 pp., September 2014
Discovering motifs using high-throughput in vitro data
Ron Zeira
Ron Zeira
MSc thesis, 99 pp., January 2013
Post-silicon test optimization using methods from bioinformatics
Guy Karlebach
Guy Karlebach
PhD thesis, 99 pp., July 2012
Modeling and Analysis of Perturbations in Gene Regulatory Networks.
Ofer Lavi
David Amar
MSc thesis, 74 pp., April 2012
Using differential co-expression for dissecting biological processes and revealing disease specific gene regulation.
Ofer Lavi
Ofer Lavi
MSc thesis, 116 pp., August 2010
Prior Knowledge Integration of Gene Networks Data into Gene Expression Analysis.
Michal Ozery-Flato
Michal Ozery-Flato
PhD thesis, 182 pp., October 2009
Computational Problems in Genome Rearrangements: from Evolution to Cancer.
Sharon Bruckner
Sharon Bruckner
MSc thesis, 57 pp., August 2009
Topology-Free Querying of Protein Interaction Networks.
Chaim Linhart
Chaim Linhart
PhD thesis, 109 pp., July 2009
Discovering motifs in large genomic datasets.
IgorUlitsky
Igor Ulitsky
PhD thesis, 139 pp., July 2009
Network-based algorithms for analysis of heterogeneous biomedical data.
Yonit Halperin
Yonit Halperin
MSc thesis, 88 pp., April 2008
Discovery of motifs involved in transcriptional regulation.
Michael Gutkin
Michael Gutkin
MSc thesis, 101 pp., March 2008
Feature selection methods for classification of gene expression profiles.
Seagull Shavit
Seagull Shavit
MSc thesis, 112 pp., September 2007
Genome-wide dissection of cellular responses to DNA double-strand breaks using integrated analysis of expression microarrays and bioinformatics
Ofir Davidovich
Ofir Davidovich
MSc thesis, 71 pp., October 2007
Methods and tools in computational human genetics
Israel Steinfeld
Israel Steinfeld
MSc thesis, 56 pp., October 2007
The Influence of Chromatin Modifiers on Transcription
Daniela Raijman
Daniela Raijman
MSc thesis, 60 pp., May 2007
A probabilistic model for the evolution of promoters
Irit Gat-Viks
Irit Gat-Viks
PhD thesis, 166 pp., January 2007
Computational analysis of molecular networks: modeling and reconstruction
Gad Kimmel
Gad Kimmel
PhD thesis, 144 pp., January 2006
Computational Problems in Modern Human Genetics
Rotem Sorek
Rotem Sorek
PhD thesis, 82 pp., January 2006
The characteristics, regulation and evolution of human alternatively spliced exons
Rani Elkon
Rani Elkon
PhD thesis, 140 pp., February 2006
Development of Bioinformatics Methods for Analysis of Functional Genomics Data and Their Application to the Study of DNA Damage Responses
Amos Tanay
Amos Tanay
PhD thesis, 206 pp., August 2005
Computational Analysis of Transcriptional Programs: Function and Evolution
Tzvika Hartman
Tzvika Hartman
PhD thesis, 113 pp., September 2004 (co-spervisor: Prof. Moni Naor, Weizmann Institute)
Combinatorial Algorithms for Genome Rearrangements and DNA Oligonucleotide Arrays
Noga Amit
Noga Amit
MSc thesis, 50 pp., September 2004
The Bicluster Graph Editing Problem
Adi Maron-Katz
Adi Maron-Katz
MSc thesis, 97 pp., July 2004
Tools for Analysis and Visualization of Gene Expression Data Obtained Using Microarrays
Tamar Barzuza
Tamar Barzuza
MSc thesis, 50 pp., Feb 2004
Computational Resolution and Tagging of Perfect Phylogeny Haplotypes
Michal Ozery-Flato
Michal Ozery-Flato
MSc thesis, 39 pp., June 2003
A Correction to the Theory of Sorting Genomes by Reversals and Translocations
Chaim Linhart
Chaim Linhart
MSc thesis, 60 pp., November 2002
The Degenerate Primer Design Problem
Dekel Tsur
Dekel Tsur
PhD thesis, 124 pp., 2002
Algorithmic Problems in Graph Theory and Molecular Biology
Nir Orlev
Nir Orlev
MSc thesis, 119 pp., September 2002 (in Hebrew) (co-supervised by Prof. Y. Shiloh)
Development of a Bioinformatic Tool for Interactive Study of Protein-Protein Interactions
Adi Akavia
Adi Akavia
MSc thesis, 110 pp., September 2002
Designing Multi-Route Synthesis in Combinatorial Chemistry - Complexity and Algorithms
Roded Sharan
Roded Sharan
PhD thesis, 207 pp., August 2002
Graph Modification Problems and their Applications to Genomic Research
Itsik Pe'er
Itsik Pe'er
PhD thesis, 167 pp., January 2002
Algorithmic Methods for Reconstruction of Biological Sequences, Gene Orders and Maps
Amos Tanay
Amos Tanay
MSc thesis, 67 pp., November 2001
Computational Expansion of Genetic Networks
Dmitri Shmulevich
Dmitri Shmulevich
MSc thesis, 2000
Analysis of Oligonucleotide Array Data: Clone Preselection and Hybridization Models
Assaf Natanzon
Assaf Natanzon
MSc thesis, 60 pp., 1999
Complexity and Approximation of Some Graph Modification Problems
Guy Mayraz
Guy Mayraz
MSc thesis, 1998
Algorithms for Physical Mapping with Non-Unique Probes
Erez Hartuv
Erez Hartuv
MSc thesis, 1998
Graph Algorithms for DNA Physical Mapping with Noisy Data
Shai Litvak
Shai Litvak
MSc thesis, 106 pp., January 1996
Efficient Algorithms for Constructing and Employing Variable-Length Markov Models of Language
Itsik Pe'er
Itsik Pe'er
MSc thesis, 1995
Interval Graphs with Metric Constraints
Yaron Pinto
Yaron Pinto
MSc thesis, 1990
Efficient Algorithms for the Minimum Cost Flow Problem with Multiple Arcs
Haim Kaplan
Haim Kaplan
MSc thesis, 1989
A Primal-Dual Path Following Algorithm for Linear Programming with Box-Type Constraints