Expander version 7 includes the following improvements: =========================================================== 1)ChIP-Seq data analysis support including: * Loading BED/GFF3 peaks file * Mapping peaks to closest gene * Visualization of peaks chromosomal positions * Visualization of peaks genomic region distribution * Human/Mouse regions enrichment within hits * Visualization of gene expression distribution within ChIP-Seq hits * Analysis of ChIP-Seq hits enrichment within gene groups * Enrichment analysis within ChIP-Seq hits 2) Support for simultaneous analysis of more than one data set (same organism) 3) Addition of Cytoscape interface for improved network visualization 4) Improved GSEA visualization 5) Updated PPI data for all orgainsms Version 7.01 additions ========================== 1) Fixed bug that prevented using the new condition order when performing clustering or enrichement analysis. 2) Fixed bug that prevented showing KEGG pathway names in GSEA dispaly. 3) Fixed bug that prevented selection of top enriched probes when performing RankSum test. 4) Addition of explanatory comments "NA=Not Available", "P-Value is not calculated for the intergenic category" to the "Peaks Distribution" bar chart after loading ChIP-Seq data. 5) Renamed in the GSEA table "Number of Hits" to "Set genes in ranking". 6) Added "Top hits genes" column to the GSEA table showing the number of hits until the maximum enrichment score. Version 7.1 additions ========================== 1) AMADEUS - Full graphical representation of the AMADEUS motif finder output. 2) DESeq2 – Option to perform DESeq2 for differential expression analysis of RNA-Seq data with respect to a given classification. 3) GSEA - Addition of another dashed line showing the maximum cumulative enrichment score (ES) in the GSEA output plot. Indication of the maximum cumulative enrichment score (ES) on the plot. 4) GSEA – Fixed a bug preventing to choose a ChIP-Seq solution as a set of genes under "Grouping solution" field. 5) Fixed a bug preventing running R scripts in EXPANDER Linux version.