1 Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv 69978, Israel.
2 University of California, Berkeley, University Avenue, Berkeley, CA 94720
3 International Computer Science Institute, 1947 Center St., Berkeley, CA 94704
* Current address: Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge MA, USA 02142
An implementation of DEGAS which can be applied to network and gene expression data is available as part of MATISSE
.
Each of the resulting dysregulated pathways listed below can be loaded in MATISSE as a session .zip file which contains all the relevant information, including network topology, gene expression, annotations etc.
