Between-pathway models for S. cerevisiae

BPMSize 1Size 2PivotsScoreGO Biological process (p-value)GenesNetwork*
12203.1462
Gene listInteractive view
23204.3776
mitotic sister chromatid cohesion(0.005)
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32205.9713
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43206.144
mitotic sister chromatid cohesion(0.005)
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52206.314
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65206.3734
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72206.6922
Gene listInteractive view
82806.7269
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92506.918
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102207.0656
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112307.1126
mitotic sister chromatid cohesion(0.005)
DNA replication checkpoint(0.001)
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122207.3875
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132307.9724
Gene listInteractive view
142208.0807
Gene listInteractive view
152208.7114
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162409.1237
tubulin folding(0.001)
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172309.3883
tubulin folding(0.001)
Gene listInteractive view
1822329.7966
response to osmotic stress(0.004)
bipolar bud site selection(0.001)
endocytosis(0.007)
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1953010.388
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2023010.4
tubulin folding(0.001)
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2122010.401
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2243010.574
chromosome segregation(0.047)
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2353110.663
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2422010.713
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2522010.77
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2622011.114
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2722011.247
Gene listInteractive view
2822011.545
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2922011.889
Gene listInteractive view
3023011.988
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31502211.997
"nuclear mRNA splicing, via spliceosome"(0.026)
Gene listInteractive view
3232012.025
Gene listInteractive view
3332012.035
Gene listInteractive view
34231012.259
DNA repair(0.014)
DNA replication checkpoint(0.019)
regulation of cyclin dependent protein kinase activity(0.012)
G1/S transition of mitotic cell cycle(0.015)
Gene listInteractive view
3553012.336
mitotic spindle checkpoint(0.001)
mitotic sister chromatid cohesion(0.019)
Gene listInteractive view
3672012.342
negative regulation of transcription by glucose(0.001)
ubiquitin-dependent protein catabolism via the multivesicular body pathway(0.001)
Gene listInteractive view
3724012.436
Gene listInteractive view
3822012.651
Gene listInteractive view
3927012.654
DNA repair(0.017)
DNA damage checkpoint(0.012)
Gene listInteractive view
4043013.334
DNA replication initiation(0.023)
DNA damage checkpoint(0.005)
Gene listInteractive view
4122013.471
Gene listInteractive view
4223013.695
Gene listInteractive view
4332013.86
Gene listInteractive view
4464113.941
chromatin modification(0.037)
RNA elongation from RNA polymerase II promoter(0.001)
histone methylation(0.001)
Gene listInteractive view
4585214.118
RNA elongation from RNA polymerase II promoter(0.001)
Gene listInteractive view
4642014.275
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4725014.677
tubulin folding(0.001)
Gene listInteractive view
4843014.714
Gene listInteractive view
4936115.576
mitotic spindle organization and biogenesis in nucleus(0.046)
Gene listInteractive view
50112015.612
chromatin silencing at silent mating-type cassette(0.001)
pre-replicative complex formation and maintenance(0.025)
chromatin silencing(0.039)
Gene listInteractive view
5142016.451
negative regulation of transcription by glucose(0.001)
ubiquitin-dependent protein catabolism via the multivesicular body pathway(0.001)
Gene listInteractive view
5225017.133
negative regulation of transcription by glucose(0.001)
ubiquitin-dependent protein catabolism via the multivesicular body pathway(0.001)
Gene listInteractive view
5345017.195
meiotic recombination(0.002)
Gene listInteractive view
5433017.468
Golgi to endosome transport(0.002)
late endosome to vacuole transport(0.006)
"homotypic vacuole fusion, non-autophagic"(0.002)
mitotic sister chromatid cohesion(0.011)
Gene listInteractive view
5535017.945
actin cortical patch assembly(0.012)
endocytosis(0.001)
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5628018.153
tubulin folding(0.001)
Gene listInteractive view
5733118.431
Gene listInteractive view
58154118.59
regulation of initiation of mating projection growth(0.002)
establishment of cell polarity (sensu Fungi)(0.001)
Gene listInteractive view
5952018.622
tubulin folding(0.001)
Gene listInteractive view
6022418.867
chromatin silencing at silent mating-type cassette(0.001)
pre-replicative complex formation and maintenance(0.001)
Gene listInteractive view
6123018.905
N-terminal protein amino acid acetylation(0.001)
Gene listInteractive view
62214018.972
Golgi to endosome transport(0.001)
late endosome to vacuole transport(0.002)
"homotypic vacuole fusion, non-autophagic"(0.001)
"retrograde transport, endosome to Golgi"(0.001)
Golgi to vacuole transport(0.001)
vesicle docking during exocytosis(0.029)
Gene listInteractive view
6342019.387
snRNA export from nucleus(0.001)
Gene listInteractive view
64217320.16
chromatin assembly or disassembly(0.011)
chromosome segregation(0.001)
Gene listInteractive view
65156720.83
mitochondrion inheritance(0.039)
actin cortical patch assembly(0.001)
cytokinesis(0.014)
actin filament organization(0.001)
exocytosis(0.030)
response to osmotic stress(0.001)
bipolar bud site selection(0.001)
endocytosis(0.001)
Gene listInteractive view
6643421.664
chromosome segregation(0.001)
microtubule nucleation(0.001)
Gene listInteractive view
67225022.43
nucleotide-excision repair(0.001)
double-strand break repair via synthesis-dependent strand annealing(0.014)
mismatch repair(0.001)
Gene listInteractive view
6842522.491
regulation of microtubule polymerization or depolymerization(0.001)
microtubule nucleation(0.001)
Gene listInteractive view
6933022.561
histone methylation(0.001)
Gene listInteractive view
7054122.586
DNA damage checkpoint(0.001)
Gene listInteractive view
7142222.604
vesicle fusion(0.001)
Gene listInteractive view
7234022.944
Gene listInteractive view
7324023.209
Gene listInteractive view
7429023.229
tubulin folding(0.001)
Gene listInteractive view
7543023.395
negative regulation of transcription by glucose(0.001)
mitotic sister chromatid cohesion(0.015)
ubiquitin-dependent protein catabolism via the multivesicular body pathway(0.001)
Gene listInteractive view
7643023.718
Gene listInteractive view
7734024.371
regulation of transcription from RNA polymerase II promoter(0.001)
Gene listInteractive view
7872024.628
Gene listInteractive view
7944024.65
"retrograde transport, endosome to Golgi"(0.001)
Gene listInteractive view
8025124.725
nucleotide-excision repair(0.001)
leading strand elongation(0.001)
Gene listInteractive view
8123024.725
pseudohyphal growth(0.041)
Gene listInteractive view
8232025.2
regulation of transcription from RNA polymerase II promoter(0.001)
poly(A) tail shortening(0.001)
Gene listInteractive view
8322225.823
filamentous growth(0.016)
signal transduction(0.001)
protein amino acid phosphorylation(0.001)
Gene listInteractive view
8422925.823
spliceosome assembly(0.010)
"nuclear mRNA splicing, via spliceosome"(0.001)
Gene listInteractive view
85172127.252
tRNA export from nucleus(0.001)
Gene listInteractive view
8662027.69
Gene listInteractive view
8792127.856
chromatin modification(0.001)
chromatin remodeling(0.001)
Gene listInteractive view
881531228.092
chromatin modification(0.001)
regulation of transcription from RNA polymerase II promoter(0.001)
transcription from RNA polymerase II promoter(0.001)
Gene listInteractive view
89210028.222
double-strand break repair via break-induced replication(0.001)
double-strand break repair via synthesis-dependent strand annealing(0.001)
double-strand break repair via nonhomologous end-joining(0.002)
telomerase-independent telomere maintenance(0.001)
Gene listInteractive view
9029028.728
actin filament organization(0.001)
Gene listInteractive view
91250029.348
N-terminal protein amino acid acetylation(0.011)
Gene listInteractive view
9232029.462
mitochondrion organization and biogenesis(0.001)
mitochondrion inheritance(0.001)
Gene listInteractive view
9325029.504
ATP synthesis coupled proton transport(0.001)
Gene listInteractive view
9473029.742
chromatin modification(0.028)
chromatin silencing at silent mating-type cassette(0.042)
chromatin silencing at rDNA(0.017)
Gene listInteractive view
9523029.878
Gene listInteractive view
9627330.073
chromatin remodeling(0.001)
Gene listInteractive view
9725330.247
chromatin modification(0.001)
Gene listInteractive view
9839230.903
protein folding(0.001)
Gene listInteractive view
99211031.082
mitotic spindle checkpoint(0.002)
"nuclear migration, microtubule-mediated"(0.027)
Gene listInteractive view
100132531.144
ER to Golgi transport(0.001)
intra-Golgi transport(0.001)
"retrograde transport, Golgi to ER"(0.001)
"retrograde transport, vesicle recycling within Golgi"(0.001)
Gene listInteractive view
10145032.621
negative regulation of meiosis(0.001)
Gene listInteractive view
102413033.215
"nuclear migration, microtubule-mediated"(0.001)
Gene listInteractive view
10345033.899
response to exogenous dsRNA(0.001)
mRNA catabolism(0.001)
Gene listInteractive view
104102033.948
regulation of transcription from RNA polymerase II promoter(0.003)
Gene listInteractive view
10532035.151
mitochondrion organization and biogenesis(0.016)
Gene listInteractive view
1061221436.538
"nuclear mRNA splicing, via spliceosome"(0.001)
Gene listInteractive view
107214336.571
pyruvate metabolism(0.024)
ubiquitin-dependent protein catabolism(0.014)
Gene listInteractive view
108210036.803
chromatin remodeling(0.001)
Gene listInteractive view
109312138.999
ER to Golgi transport(0.001)
"retrograde transport, Golgi to ER"(0.001)
Gene listInteractive view
11065639.251
regulation of transcription from RNA polymerase II promoter(0.001)
poly(A) tail shortening(0.001)
transcription initiation from RNA polymerase II promoter(0.045)
Gene listInteractive view
11192039.851
SCF-dependent proteasomal ubiquitin-dependent protein catabolism(0.001)
protein ubiquitination(0.001)
Gene listInteractive view
11228040.145
ubiquitin-dependent protein catabolism(0.019)
Gene listInteractive view
11373241.302
mitochondrion inheritance(0.002)
actin filament organization(0.001)
response to osmotic stress(0.001)
bipolar bud site selection(0.001)
endocytosis(0.001)
Gene listInteractive view
114511041.63
double-strand break repair via single-strand annealing(0.001)
DNA damage checkpoint(0.001)
Gene listInteractive view
11582042.413
nuclear migration during conjugation with cellular fusion(0.001)
"nuclear migration, microtubule-mediated"(0.001)
Gene listInteractive view
116318045.12
double-strand break repair via break-induced replication(0.013)
DNA repair(0.020)
meiotic DNA double-strand break formation(0.028)
double-strand break repair via nonhomologous end-joining(0.001)
negative regulation of DNA transposition(0.024)
Gene listInteractive view
117249047.282
regulation of initiation of mating projection growth(0.001)
cytokinesis(0.001)
vesicle fusion(0.002)
actin filament organization(0.007)
establishment of cell polarity (sensu Fungi)(0.001)
exocytosis(0.019)
response to osmotic stress(0.046)
vesicle docking during exocytosis(0.001)
bipolar bud site selection(0.001)
Golgi to plasma membrane transport(0.001)
Rho protein signal transduction(0.001)
Gene listInteractive view
118102151.813
chromatin silencing at silent mating-type cassette(0.002)
DNA replication initiation(0.001)
Gene listInteractive view
119162052.743
post-chaperonin tubulin folding pathway(0.001)
"nuclear migration, microtubule-mediated"(0.001)
Gene listInteractive view
12049253.274
G2/M transition of mitotic cell cycle(0.006)
regulation of cyclin dependent protein kinase activity(0.001)
Gene listInteractive view
12174057.64
chromatin remodeling(0.001)
transcription from RNA polymerase II promoter(0.014)
Gene listInteractive view
122216060.062
mRNA export from nucleus(0.001)
chromatin remodeling(0.001)
Gene listInteractive view
123250160.76
protein import into peroxisome matrix(0.002)
protein targeting to peroxisome(0.001)
peroxisome organization and biogenesis(0.001)
Gene listInteractive view
12439463.989
chromatin modification(0.001)
chromatin remodeling(0.003)
Gene listInteractive view
125155764.563
chromatin assembly or disassembly(0.001)
RNA elongation from RNA polymerase II promoter(0.001)
nucleosome assembly(0.014)
Gene listInteractive view
12656067.197
regulation of transcription from RNA polymerase II promoter(0.001)
chromatin silencing at rDNA(0.019)
Gene listInteractive view
12763368.199
DNA recombination(0.001)
RNA elongation from RNA polymerase II promoter(0.002)
mRNA export from nucleus(0.001)
poly(A)+ mRNA export from nucleus(0.002)
Gene listInteractive view
128229074.338
double-strand break repair via break-induced replication(0.001)
DNA repair(0.001)
double-strand break repair via synthesis-dependent strand annealing(0.001)
double-strand break repair via nonhomologous end-joining(0.002)
telomerase-independent telomere maintenance(0.001)
Gene listInteractive view
1293121383.121
mRNA capping(0.002)
establishment and/or maintenance of chromatin architecture(0.017)
RNA elongation from RNA polymerase II promoter(0.001)
transcription from RNA polymerase II promoter(0.001)
Gene listInteractive view
130323088.828
cytokinesis(0.011)
actin filament organization(0.001)
cell wall organization and biogenesis(0.005)
establishment of cell polarity (sensu Fungi)(0.021)
response to osmotic stress(0.004)
bipolar bud site selection(0.001)
Gene listInteractive view
131580101.29
negative regulation of meiosis(0.001)
chromatin remodeling(0.001)
Gene listInteractive view
1323450106.0
mitotic spindle checkpoint(0.011)
chromosome segregation(0.001)
chromatin remodeling(0.026)
Gene listInteractive view
1332129108.87
"nuclear mRNA splicing, via spliceosome"(0.001)
Gene listInteractive view
134790117.62
cytokinesis(0.001)
vesicle fusion(0.001)
exocytosis(0.008)
vesicle docking during exocytosis(0.001)
bipolar bud site selection(0.001)
Golgi to plasma membrane transport(0.001)
Gene listInteractive view
1355030179.24
DNA repair(0.001)
DNA replication checkpoint(0.049)
double-strand break repair via nonhomologous end-joining(0.017)
nucleosome assembly(0.049)
Gene listInteractive view
1365670239.88
post-chaperonin tubulin folding pathway(0.049)
tubulin folding(0.001)
chromosome segregation(0.003)
"nuclear migration, microtubule-mediated"(0.001)
chromatin remodeling(0.024)
Gene listInteractive view
1378533270.37
double-strand break repair via break-induced replication(0.013)
meiosis(0.050)
DNA repair(0.001)
mitotic sister chromatid cohesion(0.001)
double-strand break repair via synthesis-dependent strand annealing(0.001)
double-strand break repair via nonhomologous end-joining(0.014)
telomerase-independent telomere maintenance(0.001)
DNA damage checkpoint(0.014)
Gene listInteractive view
1383940278.85
double-strand break repair via break-induced replication(0.015)
regulation of transcription from RNA polymerase II promoter(0.003)
double-strand break repair via synthesis-dependent strand annealing(0.001)
histone ubiquitination(0.035)
double-strand break repair via nonhomologous end-joining(0.017)
chromatin remodeling(0.019)
Gene listInteractive view
1392876284.89
double-strand break repair via break-induced replication(0.001)
DNA repair(0.001)
"mRNA catabolism, deadenylylation-dependent decay"(0.004)
regulation of transcription from RNA polymerase II promoter(0.001)
poly(A) tail shortening(0.001)
chromatin silencing at rDNA(0.019)
meiotic DNA double-strand break processing(0.032)
double-strand break repair via synthesis-dependent strand annealing(0.006)
histone ubiquitination(0.032)
double-strand break repair via nonhomologous end-joining(0.001)
heteroduplex formation(0.032)
ubiquitin-dependent protein catabolism via the multivesicular body pathway(0.011)
Gene listInteractive view
14022010538.47
Golgi to endosome transport(0.016)
double-strand break repair via single-strand annealing(0.001)
double-strand break repair via break-induced replication(0.004)
DNA repair(0.040)
regulation of transcription from RNA polymerase II promoter(0.027)
chromatin silencing at telomere(0.019)
double-strand break repair via nonhomologous end-joining(0.049)
vacuolar acidification(0.001)
histone methylation(0.011)
Gene listInteractive view
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