Ron Shamir's group meetings

Current meetings

General:

Talks:

• Naama Barkai Weizmann Institute of Science - February 17th 2000
• Daniel Fischer Dept. of Math and Computer Science Ben Gurion University - February 3rd 2000
• Tal Pupko , Department of Zoology, Tel Aviv University - January 13th 2000
• Dan Geiger , Computer Science Department, Technion. Randomized algorithms for the loop cutset problem and their application in genetic linkage analysis - January 6th 2000
• Zohar Yakhini , Zohar Yakhini Chemical and Biological Systems Department Agilent Laboratories, a HP subsidiary. Clique graph projection and clustering in gene expression data. - December 30th 1999
• Michal Linial , Dept. of Biological Sciences, Life Sciences Institute, The Hebrew University in Jerusalem, 91904 Israel Where to seek for a new fold - The task in Structural Genomics - December 23rd 1999
• Derek G. Corneil , University of Toronto, Canada The linear structure of graphs as seen through LBFS - December 8th 1999
• Nir Ben-Tal , Department of Biochemistry Tel-Aviv University Reliable signal transduction networks by multi-stage regulation: lessons from bacterial chemotaxis - December 2nd 1999
• Stefan Haas , German Cancer Research Center, Heidelberg, Generation of a non-redundant clone set for human and mouse - November 25th 1999
• Aviv Regev , Dept. of Cell Research and Immunology, Modeling Signal Transduction Using Process Algebra - November 18th 1999
• Ann Trenk Wellesley College, The Weak Discrepancy of a Partially Ordered Set - November 8th 1999
• Amir Ben-Dor, University of Washington, The design of a universal DNA array - October 25th 1999
• Itsik Pe'er and Zipi Fligelman, report of ISMB'99 - October 4th 1999
• Dekel Tsur, Shotgun Sequencing by hybridization - September 6th 1999
• Amos Tanay, Gene Networks and Regulation - August 30th 1999
• Itsik Pe'er CPM '99 talk on Positional sequencing by hybridization and ISMB '99 talk on Algorithms for optical mapping - July 19th 1999
• Roded Sharan , Summary of impressions from the conference (WG) and school (Lipari), including an approximation algorithm by Sorin and Hart for protein folding in the 2D. HP model. - July 12th 1999
• Alexander Bolshoy, Institute of Evolution, University of Haifa Distribution of DNA curvature in bacterial genomes - June 21, 1999.
• Dan Graur, Department of Zoology, TAU, Phylogeny, Genomics and Isochores - June 14, 1999.
• Roded Sharan , Complexity Classification of Some Edge Modification Problems - June 7, 1999.
• Nir Friedman , Department of Computer Science, HUJI, Exploiting Structure in Probability Distributions - May 31 1999.
• Dmitri Shmulevich , A Probabilistic Model for Hybridization Signals May 10 1999,
• Dana Pe'er, Itsik Pe'er, and Ron Shamir Rump Session on selected talks from Recomb99 - April 26, 1999.
• Hanah Margalit, The Hebrew University of Jerusalem Common Principles in DNA Target Recognition by Proteins: Implication for Prediction of Protein-DNA Binding Sites - Mar 4, 1999.
• Itsik Pe'er , Heuristics for Phylogenetic Reconstruction under Various Probabilitstic Models - Feb 25, 1999.
• Shmuel Pietrokovski, Molecular Genetics dept. Weizmann Institute of Science, Identifying subtle protein similiarities using sequence blocks, graph theory algorithms and a good dose of biology - Feb 18, 1999.
• Roded Sharan , Fully Dynamic Algorithm for Proper Interval Graphs - Feb 11, 1999.
• Tanya Fuhcs, The Genome Center, Weizmann Institute of Science, Fishing Out Olfactory Receptor Genes by Hybridization Fingerprints - Feb 4, 1999.
• Roded Sharan , introduction to Dynamic Data Structure and a Dynamic Spanning Forest Algorithm - Jan 28, 1999.
• Zach Adam, Faculty of Agriculture, HUJI, Mechanisms of Gene Tagetting in Plants - Jan 21, 1999.
• Ilan Adler, Department of Operations Researc, UC Berkley, Generalizing the Ellipsoid Method for Algebraian Numbers - Jan 14, 1999.
• Ron shamir , Roded Sharan , and Itsik Pe'er , Positional Sequencing by Hybridization - Dec 24, 1998.
• Itsik Pe'er , Probability Models for Genome Rearrangements and Linear Invariants for Phylogenetic Inference - Dec 3, 1998 (cont'd Dec 10 1998).
• Assaf Natanzon , edge modification problems - Nov 26, 1998.
• Dmitri Shmulevich , Construction of physical maps from oligonucleotide fingerprints data - Nov 19, 1998.
• Dr. Ramit Mehr (Princeton University), A stochastic model for genetic shifts in the antibody repertoire - Nov 12, 1998.
• Dekel Tsur, Sequencing by hybridization - Nov 5, 1998.
• Erez Hartuv, Cluster analysis by Highly Connected Subgraphs with applications to cDNA clustering - Sep 14, 1998.
• Ron Shamir, Optimizing the BAC-End Strategy for Sequencing the Human Genome (joint with R. M. Karp) - Sep 7, 1998.
• Dekel Tsur, The maximum subforest problem - Aug 31, 1998.
• Itsik Pe'er Algorithms for optical mapping (joint with R.M. Karp) - Aug 24, 1998.
• Roded Sharan A polynomial approximation algorithm for the minimum fill-in problem (joint with Assaf Natanzon) - Aug 17, 1998.
• Guy Mayraz Physical mapping using short, non-unique, probes - Aug 10, 1998.